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Full information on isolate 2019/00393 (id:5673)

Provenance/primary metadata

id: 5673
isolate: 2019/00393
alias: IP41727
species genotypic: pseudotuberculosis
genotype: 16
comments: jusqu'au 12/05/2019 assignation: Y.pseudotuberculosis genotype 16
sender: Sylvie Brémont, Institut Pasteur, Paris
curator: Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
update history: 8 updates show details
date entered: 2019-04-01
datestamp: 2019-05-13

Sequence bin

method: Illumina
contigs: 112
total length: 4,566,134 bp
max length: 191,155 bp
mean length: 40,770 bp
N50: 100,917
L50: 18
N90: 34,830
L90: 49
N95: 19,538
L95: 57
%GC: 47.57
Ns: 0
gaps: 0
loci tagged: 1,993

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
Yersinia cgMLST	500	500	100
Y.enterocolitica cgMLST	1727	500	28
Y.pseudotuberculosis cgMLST	1921	1916	99

Analysis

rMLST species identification

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Yersinia pseudotuberculosis	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pseudotuberculosis	100%

Analysis performed: 2025-06-03

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups Hide groups

Schemes and loci

All loci
- Typing
  - Genus
    - Yersinia cgMLST
    - Species
      - Y.enterocolitica cgMLST
      - Y.pseudotuberculosis cgMLST
- Other schemes
  - Virulence factors

Navigate and select schemes within tree to display allele designations

Tools

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Analysis: