Full information on isolate ERL04757 (id:5)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 5
- isolate
- ERL04757
- accession number
- GCF_001135865.1
- species phenotypic
- enterocolitica
- biotype
- 4
- serotype
- O:3
- species genotypic
- enterocolitica
- genotype
- 4
- isolation date
- 2004
- category
- Clinical
- origin
- Blood
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 4
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 20 updates show details
- date entered
- 2016-04-25
- datestamp
- 2025-04-02
- country
- New Zealand
Sequence bin
- method
- Unknown
- contigs
- 346
- total length
- 4,408,090 bp
- max length
- 135,299 bp
- mean length
- 12,741 bp
- N50
- 28,241
- L50
- 46
- N90
- 7,359
- L90
- 162
- N95
- 4,413
- L95
- 200
- %GC
- 47.11
- Ns
- 11923
- gaps
- 85
- loci tagged
- 1,828
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 499 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 1720 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 499 | 25 | |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Y.enterocolitica_3-mismatch | Y.enterocolitica cgMLST | Single-linkage | 3 | experimental | 5 (2 isolates) |
| Y.enterocolitica_5-mismatch | Y.enterocolitica cgMLST | Single-linkage | 5 | experimental | 5 (2 isolates) |
| Y.enterocolitica_3-mismatch | Y.enterocolitica cgMLST | Single-linkage | 3 | experimental | 5 (2 isolates) |
| Y.enterocolitica_5-mismatch | Y.enterocolitica cgMLST | Single-linkage | 5 | experimental | 5 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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