Full information on isolate 2018/00019 (id:3680)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 3680
- isolate
- 2018/00019
- alias
- IP39770
- accession number
- GCA_902176085.1
- species genotypic
- enterocolitica
- genotype
- 2/3-9b
- isolation date
- 06/01/2018
- category
- Clinical
- origin
- Feces
- age
- 22
- sex
- M
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 23-9b
- sender
- Sylvie Brémont, Institut Pasteur, Paris
- curator
- Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
- update history
- 20 updates show details
- date entered
- 2018-01-18
- datestamp
- 2026-01-05
- date received
- 2018-01-10
- CP patient
- 57170
- CP labo
- 54300
- country code
- FRA
- country
- France
Sequence bin
- method
- Unknown
- contigs
- 134
- total length
- 4,470,412 bp
- max length
- 224,133 bp
- mean length
- 33,362 bp
- N50
- 84,441
- L50
- 19
- N90
- 20,983
- L90
- 56
- N95
- 12,360
- L95
- 70
- %GC
- 46.98
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,802
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 1726 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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