Full information on isolate IP38859 (id:2719)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 2719
- isolate
- IP38859
- accession number
- GCA_902169975.1
- species phenotypic
- enterocolitica
- biotype
- 2
- serotype
- O:9
- species genotypic
- enterocolitica
- genotype
- 2/3-9b
- isolation date
- 06/04/2017
- category
- Clinical
- origin
- Feces
- age
- 72
- sex
- M
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 23-9b
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
- update history
- 14 updates show details
- date entered
- 2017-05-12
- datestamp
- 2026-01-05
- date received
- 2017-04-14
- CP labo
- 87200
- country code
- FRA
- country
- France
Sequence bin
- method
- Unknown
- contigs
- 145
- total length
- 4,158,856 bp
- max length
- 196,427 bp
- mean length
- 28,682 bp
- N50
- 62,475
- L50
- 22
- N90
- 18,452
- L90
- 71
- N95
- 10,341
- L95
- 86
- %GC
- 47.31
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,750
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 482 | 96 | |
| Y.enterocolitica cgMLST | 1727 | 1643 | 95 | |
| Y.pseudotuberculosis cgMLST | 1921 | 482 | 25 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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