Full information on isolate IP38461 (id:2320)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 2320
- isolate
- IP38461
- accession number
- GCA_902169555.1
- species phenotypic
- enterocolitica
- biotype
- 2
- serotype
- O:9
- species genotypic
- enterocolitica
- genotype
- 2/3-9b
- isolation date
- 22/11/2016
- category
- Clinical
- origin
- Blood
- age
- 62
- sex
- F
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 23-9b
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
- update history
- 19 updates show details
- date entered
- 2017-01-12
- datestamp
- 2026-01-05
- date received
- 2016-11-24
- CP patient
- 6720
- CP labo
- 67703
- country code
- FRA
- country
- France
Sequence bin
- method
- Unknown
- contigs
- 157
- total length
- 4,559,343 bp
- max length
- 193,485 bp
- mean length
- 29,041 bp
- N50
- 67,913
- L50
- 22
- N90
- 17,895
- L90
- 72
- N95
- 11,100
- L95
- 88
- %GC
- 46.88
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,840
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 1724 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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