Full information on isolate IP38425 (id:2284)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 2284
- isolate
- IP38425
- accession number
- GCA_902169605.1
- species phenotypic
- enterocolitica
- biotype
- 2
- serotype
- O:9
- species genotypic
- enterocolitica
- genotype
- 2/3-9b
- isolation date
- 03/11/2016
- category
- Clinical
- origin
- Feces
- age
- 65
- sex
- F
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 23-9b
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
- update history
- 19 updates show details
- date entered
- 2017-01-12
- datestamp
- 2026-01-05
- date received
- 2016-11-08
- CP patient
- 73310
- CP labo
- 73000
- country code
- FRA
- country
- France
Sequence bin
- method
- Unknown
- contigs
- 213
- total length
- 4,383,991 bp
- max length
- 247,046 bp
- mean length
- 20,583 bp
- N50
- 53,692
- L50
- 25
- N90
- 11,198
- L90
- 93
- N95
- 6,154
- L95
- 118
- %GC
- 47.23
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,819
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 496 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 1713 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 496 | 25 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: