Full information on isolate IP28669 (id:20)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 20
- isolate
- IP28669
- species phenotypic
- enterocolitica
- biotype
- 4
- serotype
- O:3
- species genotypic
- enterocolitica
- genotype
- 4
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 4
- sender
- Cyril Savin, Institut Pasteur, Paris
- curator
- Auto Tagger
- update history
- 17 updates show details
- date entered
- 2016-04-25
- datestamp
- 2021-10-08
Sequence bin
- method
- Unknown
- contigs
- 257
- total length
- 4,486,806 bp
- max length
- 174,042 bp
- mean length
- 17,459 bp
- N50
- 43,746
- L50
- 32
- N90
- 11,498
- L90
- 107
- N95
- 7,408
- L95
- 131
- %GC
- 46.97
- Ns
- 2755
- gaps
- 125
- loci tagged
- 1,822
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 493 | 98 | |
| Y.enterocolitica cgMLST | 1727 | 1706 | 98 | |
| Y.pseudotuberculosis cgMLST | 1921 | 493 | 25 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: