Full information on isolate 647/5307 (id:2)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 2
- isolate
- 647/5307
- accession number
- GCF_000284955.1
- species phenotypic
- enterocolitica
- biotype
- 4
- serotype
- O:3
- species genotypic
- enterocolitica
- genotype
- 4
- category
- Unknown
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 4
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 19 updates show details
- date entered
- 2016-04-25
- datestamp
- 2025-04-01
Sequence bin
- method
- Unknown
- contigs
- 18
- total length
- 4,553,105 bp
- max length
- 1,333,623 bp
- mean length
- 252,951 bp
- N50
- 949,451
- L50
- 2
- N90
- 332,133
- L90
- 5
- N95
- 135,071
- L95
- 6
- %GC
- 46.90
- Ns
- 126749
- gaps
- 238
- loci tagged
- 1,828
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 490 | 98 | |
| Y.enterocolitica cgMLST | 1727 | 1695 | 98 | |
| Y.pseudotuberculosis cgMLST | 1921 | 490 | 25 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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Tools
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