Full information on isolate GCA_001319305.1 (id:16724)
Provenance/primary metadata
- id
- 16724
- isolate
- GCA_001319305.1
- species phenotypic
- Unknown
- species genotypic
- enterocolitica
- genotype
- 2/3-9b
- isolation date
- 2008
- sender
- Biel Garcias Puigserver, Autonomous University of Barcelona
- curator
- Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
- update history
- 6 updates show details
- date entered
- 2023-01-19
- datestamp
- 2026-01-05
- country
- New Zealand
Sequence bin
- method
- Illumina
- contigs
- 109
- total length
- 4,521,631 bp
- max length
- 243,576 bp
- mean length
- 41,483 bp
- N50
- 92,610
- L50
- 16
- N90
- 24,971
- L90
- 53
- N95
- 11,782
- L95
- 66
- %GC
- 46.85
- Ns
- 758
- gaps
- 28
- loci tagged
- 1,838
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 1723 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Y.enterocolitica_3-mismatch | Y.enterocolitica cgMLST | Single-linkage | 3 | experimental | 178 (2 isolates) |
| Y.enterocolitica_5-mismatch | Y.enterocolitica cgMLST | Single-linkage | 5 | experimental | 168 (2 isolates) |
| Y.enterocolitica_3-mismatch | Y.enterocolitica cgMLST | Single-linkage | 3 | experimental | 178 (2 isolates) |
| Y.enterocolitica_5-mismatch | Y.enterocolitica cgMLST | Single-linkage | 5 | experimental | 168 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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