Full information on isolate GCA_001090445.1 (id:16710)
Provenance/primary metadata
- id
- 16710
- isolate
- GCA_001090445.1
- species phenotypic
- Unknown
- species genotypic
- enterocolitica
- genotype
- 2/3-9b
- isolation date
- 2003
- sender
- Biel Garcias Puigserver, Autonomous University of Barcelona
- curator
- Cyril Savin, Institut Pasteur, Paris, France (E-mail: cyril.savin@pasteur.fr)
- update history
- 6 updates show details
- date entered
- 2023-01-19
- datestamp
- 2026-01-05
- country
- New Zealand
Sequence bin
- method
- Illumina
- contigs
- 122
- total length
- 4,515,353 bp
- max length
- 235,409 bp
- mean length
- 37,012 bp
- N50
- 88,595
- L50
- 17
- N90
- 20,861
- L90
- 56
- N95
- 12,441
- L95
- 69
- %GC
- 46.84
- Ns
- 584
- gaps
- 21
- loci tagged
- 1,842
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 1726 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: