Full information on isolate IP28590 (id:167)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 167
- isolate
- IP28590
- species phenotypic
- aleksiciae
- serotype
- O:28-50,51
- species genotypic
- kristensenii
- genotype
- -
- comments
- MLSA: Y.kristensenii - jusqu'au 12/05/2019 assignation: Y.kristensenii genotype 2 - jusqu'au 08/09/2020 Y.kristensenii
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 12 updates show details
- date entered
- 2016-05-09
- datestamp
- 2020-09-08
Sequence bin
- method
- Unknown
- contigs
- 177
- total length
- 4,578,996 bp
- max length
- 194,796 bp
- mean length
- 25,871 bp
- N50
- 50,845
- L50
- 28
- N90
- 13,625
- L90
- 88
- N95
- 8,599
- L95
- 109
- %GC
- 47.57
- Ns
- 0
- gaps
- 0
- loci tagged
- 562
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Schemes and loci
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Tools
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