Full information on isolate IP22276 (id:16)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 16
- isolate
- IP22276
- accession number
- GCF_001107025.1
- species phenotypic
- enterocolitica
- biotype
- 4
- serotype
- O:3
- species genotypic
- enterocolitica
- genotype
- 4
- isolation date
- 15/05/1991
- category
- Clinical
- origin
- Feces
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 4
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 20 updates show details
- date entered
- 2016-04-25
- datestamp
- 2025-04-02
- country
- Australia
Sequence bin
- method
- Illumina
- contigs
- 112
- total length
- 4,409,109 bp
- max length
- 219,795 bp
- mean length
- 39,368 bp
- N50
- 87,968
- L50
- 18
- N90
- 25,939
- L90
- 54
- N95
- 14,747
- L95
- 64
- %GC
- 46.97
- Ns
- 119
- gaps
- 6
- loci tagged
- 1,800
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 499 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 1723 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 499 | 25 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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