Full information on isolate IP28581 (id:159)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 159
- isolate
- IP28581
- species phenotypic
- aleksiciae
- serotype
- O:12,25-12,26
- species genotypic
- occitanica
- genotype
- -
- comments
- MLSA: Y.kristensenii - jusqu'au 12/05/2019 assignation: Y.kristensenii genotype 1 - jusqu'au 08/09/2020 Y.kristensenii.3
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 15 updates show details
- date entered
- 2016-05-09
- datestamp
- 2020-09-08
Sequence bin
- method
- Unknown
- contigs
- 303
- total length
- 4,159,331 bp
- max length
- 101,653 bp
- mean length
- 13,728 bp
- N50
- 29,468
- L50
- 44
- N90
- 7,409
- L90
- 152
- N95
- 4,613
- L95
- 188
- %GC
- 47.95
- Ns
- 0
- gaps
- 0
- loci tagged
- 548
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 495 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 495 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 495 | 25 | |
Schemes and loci
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