Full information on isolate IP08791 (id:155)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 155
- isolate
- IP08791
- species phenotypic
- aldovae
- serotype
- O:17
- species genotypic
- aldovae
- comments
- jusqu'au 12/05/2019 assignation: Y.aldovae
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2016-05-02
- datestamp
- 2019-05-13
Sequence bin
- method
- Unknown
- contigs
- 98
- total length
- 4,553,869 bp
- max length
- 531,508 bp
- mean length
- 46,469 bp
- N50
- 198,581
- L50
- 8
- N90
- 47,647
- L90
- 25
- N95
- 27,488
- L95
- 31
- %GC
- 47.64
- Ns
- 1
- gaps
- 1
- loci tagged
- 574
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 500 | 100 | |
| Y.enterocolitica cgMLST | 1727 | 500 | 28 | |
| Y.pseudotuberculosis cgMLST | 1921 | 500 | 26 | |
Schemes and loci
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