Full information on isolate IP37406 (id:127)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 127
- isolate
- IP37406
- accession number
- GCA_902168895.1
- species phenotypic
- enterocolitica
- biotype
- 4
- serotype
- O:3
- species genotypic
- enterocolitica
- genotype
- 4
- isolation date
- 30/12/2015
- category
- Clinical
- origin
- Feces
- age
- 47
- sex
- F
- comments
- jusqu'au 12/05/2019 assignation: Y.enterocolitica genotype 4
- sender
- Cyril Savin
- curator
- Cyril Savin, Institut Pasteur, Paris (E-mail: cyril.savin@pasteur.fr)
- update history
- 24 updates show details
- date entered
- 2016-04-25
- datestamp
- 2025-04-02
- date received
- 2016-01-07
- CP labo
- 67000
- country code
- FRA
- country
- France
Sequence bin
- method
- Unknown
- contigs
- 145
- total length
- 4,381,978 bp
- max length
- 213,549 bp
- mean length
- 30,221 bp
- N50
- 63,121
- L50
- 23
- N90
- 20,833
- L90
- 69
- N95
- 11,388
- L95
- 84
- %GC
- 47.05
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,827
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| Yersinia cgMLST | 500 | 497 | 99 | |
| Y.enterocolitica cgMLST | 1727 | 1719 | 99 | |
| Y.pseudotuberculosis cgMLST | 1921 | 497 | 25 | |
Similar isolates (determined by classification schemes)
No similar isolates at any threshold. Show groups
Schemes and loci
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