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Mycobacterium abscessus locus/sequence definitions database

The Mycobacterium abscessus PasteurMLST database contains data for a collection of isolates that represent the total known diversity of Kingella species. For every allelic profile in the profiles/sequence definition database there is at least one corresponding isolate deposited here. Any isolate may be submitted to this database and consequently it should be noted that it does not represent a population sample.

Query a sequence

Single sequence

Query a single sequence or whole genome assembly to identify allelic matches.

Batch sequences

Query multiple independent sequences in FASTA format to identify allelic matches.

Find alleles

By specific criteria

Find alleles by matching criteria (all loci together)

By locus

Select, analyse and download specific alleles from a single locus.

Search for allelic profiles

By specific criteria

Search, browse or enter list of MLST profiles

By MLST allelic profile

This can include partial matches to find related profiles.

In a batch

Look up multiple MLST allelic profiles together.
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DOWNLOADS
  • Allele sequences
  • MLST profiles
EXPORT
  • Locus sequences
  • Profile sequences
  • Profiles
ANALYSIS
  • BURST
  • Locus Explorer
  • Sequence comparison
  • Sequence similarity
CUSTOMISE
  • General options
  • Scheme options
INFORMATION
  • About BIGSdb
  • Database status
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