Export plugins

Export plugins - Jump to: FASTA Export | Profile Export | Sequence Export

FASTA Export

Summary: Export FASTA file of sequences following an allele attribute query

Launch 'FASTA Export'

Profile Export

Summary: Export file of allelic profile definitions following a scheme query

Documentation bigsdb.readthedocs.io

Launch 'Profile Export'

Sequence Export

Summary: Export concatenated allele sequences in XMFA and FASTA formats

This plugin creates concatenated XMFA and FASTA files of selected loci for a particular dataset. These sequences can optionally be aligned, using either MAFFT or MUSCLE, facilitating quick analysis of the outputs in third-party phylogenetic analysis packages.

Documentation bigsdb.readthedocs.io

Launch 'Sequence Export'