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Other loci

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Full name/product Aliases Curator(s) Last updated
16S_rRNA DNA9Variable: No limits set 1532153316S ribosomal RNA V. Bouchez, S. Brisse2013-11-04
B1917_3792_tctC DNA0Variable: No limits set
BORD005014 (ptxS1) DNA25Variable: No limits set 810810 V. Bouchez, S. Brisse, S. Hauck2016-05-11
BORD005015 (ptxS2) DNA14Variable: No limits set 396396 V. Bouchez, S. Brisse, S. Hauck2014-03-26
BORD005016 DNA12Variable: No limits set 684684ptxS3 V. Bouchez, S. Brisse, S. Hauck2015-03-11
BORD005017 (ptxS4) DNA14Variable: No limits set 396396 V. Bouchez, S. Brisse, S. Hauck2014-03-26
BORD005018 (ptxS5) DNA15Variable: No limits set 362363 V. Bouchez, S. Brisse, S. Hauck2017-01-11
BORD005019 (prn) DNA51Variable: No limits set 26972823 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005020 (fimW) DNA23Variable: No limits set 624633 V. Bouchez, S. Brisse, S. Hauck2016-07-11
BORD005021 (fimH) DNA26Variable: No limits set 615630 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005022 (brkA) DNA32Variable: No limits set 30243045 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005023 (brkB) DNA21Variable: No limits set 891900 V. Bouchez, S. Brisse, S. Hauck2016-05-11
BORD005024 (fhaB) DNA36Variable: No limits set 1075510779 V. Bouchez, S. Brisse, S. Hauck2020-11-23
BORD005025 (ompP) DNA21Variable: No limits set 11161167 V. Bouchez, S. Brisse, S. Hauck2016-11-12
BORD005026 (ompQ) DNA33Variable: No limits set 10951098 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005027 (tcfA) DNA9Variable: No limits set 19442019 V. Bouchez, S. Brisse, S. Hauck2017-01-11
BORD005028 (vag8) DNA35Variable: No limits set 27482748 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005029 (bipA) DNA15Variable: No limits set 46954737 V. Bouchez, S. Brisse, S. Hauck2016-07-11
BORD005030 (bapC) DNA37Variable: No limits set 27092718 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005031 (cyaA) DNA50Variable: No limits set 51215121 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005032 (bvgA) DNA35Variable: No limits set 615630 V. Bouchez, S. Brisse, S. Hauck2016-11-12
BORD005033 (bvgS) DNA61Variable: No limits set 37113732 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005034 (bhoB) DNA4Variable: No limits set 651651 V. Bouchez, S. Brisse, S. Hauck2014-02-26
BORD005035 (bhoC) DNA4Variable: No limits set 981984 V. Bouchez, S. Brisse, S. Hauck2014-02-26
BORD005036 (bhoD) DNA1Variable: No limits set 495495 V. Bouchez, S. Brisse, S. Hauck2013-10-30
BORD005037 (bhoE) DNA1Variable: No limits set 918918 V. Bouchez, S. Brisse, S. Hauck2013-10-31
BORD005038 (alcA) DNA22Variable: No limits set 13861386alcaligin biosynthesis enzymeBP2456 V. Bouchez, S. Brisse, S. Hauck2017-07-11
BORD005039 (alcB) DNA12Variable: No limits set 606606alcaligin biosynthesis proteinBP2457 V. Bouchez, S. Brisse, S. Hauck2016-11-12
BORD005040 (alcC) DNA27Variable: No limits set 18571863alcaligin biosynthesis proteinBP2458 V. Bouchez, S. Brisse, S. Hauck2016-07-11
BORD005041 (alcD) DNA26Variable: No limits set 801801hypothetical proteinBP2459 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005042 (alcE) DNA17Variable: No limits set 11941209putative iron-sulfur proteinBP2460 V. Bouchez, S. Brisse, S. Hauck2015-05-11
BORD005043 (alcR) DNA22Variable: No limits set 975975transcriptional regulatorBP2461 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BORD005044 (alcS) DNA25Variable: No limits set 12241224alcaligin exporterBP2462 V. Bouchez, S. Brisse, S. Hauck2015-03-11
BORD005045 (fauA) DNA41Variable: No limits set 22052205ferric alcaligin siderophore receptorBP2463 V. Bouchez, S. Brisse, S. Hauck2019-09-11
BP0500 (bteA) DNA52Variable: No limits set 19711980BP_RS02525; bteA 2021-06-17
BP2252 (bopB) DNA48Variable: No limits set 12031203bopB; BP_RS11260 2021-06-21
BP3439 (dnt) DNA0Variable: No limits set BP_RS17290; dnt
brkB (BP3493) DNA28Variable: No limits set 891900BP3493; BP_RS17565 2021-06-02
f_ptxP (ptxP) DNA30Variable: No limits set 201201pertussis toxin gene promoter V. Bouchez, S. Brisse2015-02-05
hIS1001 DNA2Variable: No limits set 446446IS1001-like sequence in Bordetella holmesii V. Bouchez, S. Brisse2013-11-04
IS1001 DNA2Variable: No limits set 13061307insertion sequence 1001, two forms exists (B. parapertussis, also known as pIS1001 and B. holmesii, also known as hIS1001.) V. Bouchez, S. Brisse2013-11-04
IS481 DNA10Variable: No limits set 10531053insertion sequence 481 V. Bouchez, S. Brisse2013-11-04
ompP (BP0840) DNA32Variable: No limits set 11161167BP0840; BP_RS04185 2021-05-03
ompQ (BP3405) DNA55Variable: No limits set 10951098BP3405; BP_RS17120 2021-05-03
ptxS2 (BP3784) DNA23Variable: No limits set 396396BP3784; BP_RS19045; ptxB 2021-06-03
ptxS3 DNA19Variable: No limits set 684684BP3787; BP_RS19060; ptxC 2021-05-03
ptxS4 (BP3785) DNA23Variable: No limits set 396396BP3785; BP_RS19050; ptxD 2021-06-03
ptxS5 (BP3786) DNA18Variable: No limits set 362363BP3786; BP_RS19055; ptxE 2021-05-03
VNTR4 (VNTR4) DNA0Variable: No limits set

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