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211

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Genome count

211

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211 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields															Bp_vaccine antigens						cgMLST_pertussis	macrolide resistance					MLST									Other toxins	T3SS						Loci
id	isolate	aliases	duplicate number	species	site	disease	country	region	city	source type	host	other source info	source lab	sequencing technology	ptxB (BP3784)	ptxC (BP3787)	ptxD (BP3785)	ptxE (BP3786)	fhaB-2400_5550	BPagST	cgST	23S_rRNA	fhaB-2400_5550	fhaBx-1_3193	fhaBy-3190_7183	fhaBz-7180_10773	adk	fumC	glyA	tyrB	icd	pepA	pgm	ST	clonal complex	dnt (BP3439)	bopB (BP2252)	bopD (BP2253)	bopN (BP2257)	bsp22 (BP2256)	bteA (BP0500)	T3SStype	nrdA_765
505	RB50	BX470250; GCF_000195675.1; NC_002927; PRJNA24; PRJNA57613	107	B. bronchiseptica I-1	nasal cavity	healthy	USA				rabbit				2	2	2	2	21	1,5		5	21				2	6	4	1	1	4	2	12	ST-6 complex	2	2	21	24	3	2	1	162
506	12822	BX470249; GCF_000195675.1; NC_002928; PRJNA25; PRJNA57615	106	B. parapertussis			Germany			Human	human				3	3	3	3	15			5	15	25	12		2	2	2	2	2	2	5	19		3	3	3	3	2	3	2	165
507	Tohama I	BX470248; GCF_000195715.1; NC_002929; PRJNA26; PRJNA57617	105	B. pertussis			Japan				human				1	1	1	4	1	3	294	1	1	1	1	1	1	1	1	1	1	1	1	1	ST-2 complex	1	1	1	1	1	1	3	174
510	CS	CP002695; PRJNA158859; PRJNA66287		B. pertussis			China				human				1	1	1	4	1	3	27	1	1	1	1	1	1	1	1	1	1	1	1	1	ST-2 complex	1	1	1	1	1	1	3	174
600	I124	ERR380644; WTCHG_45803_290		B. bronchiseptica II			USA			Human	human				4	5	4	5				12					5	3	13	6	16	3	10	77		0	41		17	6
601	D756	ERR380639; WTCHG_45803_285		B. bronchiseptica I-1			USA	MA			human				2	2	2	2	0	5		5	0	0	0		2	6	4	1	1	4	2	12	ST-6 complex	2	2	22	24	3			162
602	D988	ERR380640; WTCHG_45803_286		B. bronchiseptica I-1			USA	CO			human				2	2	2	2	0	5		5	0		0		2	6	4	1	1	4	2	12	ST-6 complex	2	2		24	3	2		162
603	E007	ERR380641; WTCHG_45803_287		B. bronchiseptica I-4			USA	RI		Human	human																3	2	1	2	4	6	6	25			5		25	5	5		171
604	E020	ERR380642; WTCHG_45803_288		B. bronchiseptica II			USA	MO		Human	human				5	6	5	6	22	6		12	22				10	3	13	6	10	3	10	78			42		18	7
605	H247	ERR380643; WTCHG_45803_289		B. bronchiseptica I-4			USA	MN		Human	human											12					3	2	1	2	4	6	6	25			5		25	5	5		171
859	B0887	ERR031101		B. pertussis			Unknown								1	1	1	4	2	2	1694	1	2	2	1		1	1	1	1	1	1	1	1	ST-2 complex	4	4	1	1	1			174
899	MO275	SAMN02231297; SRR931863	13	B. bronchiseptica I-4			Unknown				human				15	8	15	8	24	10		12	24				3	2	1	2	4	6	7	3		11	13	23	7	5	11	6	171
900	MO221	SAMN02231425; SRR931865	15	B. bronchiseptica I-4			USA	North America			human				16	9	16	9	25	11		10	25				4	5	1	2	4	8	6	17			14	24	26	10	12	7	171
904	MBORD731	SAMN02231430; SRR931870		B. bronchiseptica I-1			Denmark	Europe			horse				14	3	14	3				11					2	2	4	1	1	4	2	6	ST-6 complex	8	15	25	14	5	2	8	162
905	MBORD762	SAMN02231431; SRR931871		B. bronchiseptica I-1			Ireland	Europe			guinea pig				2	2	2	2		12		5					2	2	4	1	3	4	2	14	ST-6 complex	9	16	21	27	3	2	9	162
906	MBORD681	SAMN02231433; SRR931873	25	B. bronchiseptica I-1			Australia	Australia			koala				2	2	2	2	0	12		5	0		0		2	2	4	1	3	10	2	94		13	2	4	28	11	2	10	162
907	MBORD698	SAMN02231434; SRR931874	24	B. bronchiseptica I-1			Australia	Australia			koala				2	2	2	2		12		5			0		2	2	4	1	3	10	2	94		13	2	4	28	11	2	10	162
909	MBORD678	SAMN02231436; SRR931876	19	B. bronchiseptica I-1			Unknown				guinea pig				2	2	2	2				5			0		2	2	4	1	3	4	2	14	ST-6 complex	14	2	4	5	3	2	11
911	MBORD665	SAMN02231439; SRR931880	20	B. bronchiseptica I-1			Unknown				guinea pig				2	2	2	2				11			0		2	4	4	1	1	4	2	7	ST-6 complex	15	2	26	3	3	15	12	162
919	F2	SAMN02231450; SRR931891	11	B. bronchiseptica I-4			USA	North America			turkey								26			10	26				4	2	6	2	4	6	6	65		21	20	27	29	5	17	13	171
945	CARE970018BB	SAMN02263910; SRR942675		B. bronchiseptica I-1			USA	North America			pig				11	10	11	3							0		2	4	4	1	1	4	2	7	ST-6 complex	12	2	4	5	3	13	14	162
950	SAMEA1682491	ERR225613		B. bronchiseptica I-1			Unknown								11	10	11	3				5					2	4	4	1	1	4	2	7	ST-6 complex	12	2	4	5	3	13	14	162
951	SAMEA168248	ERR225614		B. bronchiseptica I-1			Unknown								11	10	11	3				5					2	4	4	1	1	4	2	7	ST-6 complex	12	2	4	5	3	13	14	162
960	ERR212373			B. pertussis			Unknown								1	4	1	4	1	9	1723	1	1	1	1	1	1	1	1	3	11	1	1	83		1	1	1	1	1	1	3	174
961	ERR212374			B. pertussis			Unknown								1	4	1	4	1	4	1724	1	1	1	1	1	1	1	1	3	1	1	1	2	ST-2 complex	1	1	1	1	1	1	3	174

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Badhai et al. 2021 FEMS Microbiol Lett [Epub ahead of print]:
Bridel et al. 2022 Nat Commun 13:3807
Collings et al. 1985 J Med Microbiol 19:247-55
Gross et al. 2008 BMC Genomics 9:449
Horiguchi et al. 1993 Infect Immun 61:3611-5
Ivanov et al. 2015 BMC Genomics 16:863
Ivanov et al. 2016 Int J Syst Evol Microbiol 66:5452-5459
Ko et al. 2005 J Clin Microbiol 43:2516-9
Kozarewa et al. 2009 Nat Methods 6:291-5
Loong et al. 2017 Genom Data 12:69-70
Magyar et al. 1988 Vet Microbiol 18:135-46
Okada et al. 2014 Genome Announc 2:
Park et al. 2012 BMC Genomics 13:545
Parkhill et al. 2003 Nat Genet 35:32-40
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Quail et al. 2011 Nat Methods 9:10-1
Rath et al. 2008 Clin Infect Dis 46:905-8
Register et al. 2015 Genome Announc 3:
Ross et al. 1967 Can J Comp Med Vet Sci 31:53-7
Sebaihia et al. 2006 J Bacteriol 188:6002-15
Sichtig et al. 2019 Nat Commun 10:3313
Spilker et al. 2016 Genome Announc 4:
Tazato et al. 2015 Int J Syst Evol Microbiol 65:4830-4838
Tettelin et al. 2017 Genome Announc 5:
Theofiles et al. 2014 Mayo Clin Proc 89:1378-88
Tran et al. 2022 Nat Commun 13:693
van Gent et al. 2012 PLoS One 7:e46407
Vandamme et al. 1995 Int J Syst Bacteriol 45:37-45
Vandamme et al. 1996 Int J Syst Bacteriol 46:849-58
Vandamme et al. 2015 Int J Syst Evol Microbiol 65:3674-3682
Wang et al. 2020 Infect Genet Evol 81:104258
Weigand et al. 2015 Genome Announc 3:
Weigand et al. 2016 Genome Announc 4:
Weigand et al. 2019 mSystems 4:
Wu et al. 2022 Front Microbiol 13:901617
Xu et al. 2019 Emerg Microbes Infect 8:461-470
Zhang et al. 2011 J Bacteriol 193:4017-8