Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Filters

Publication:
Project:
Autotransporters p…
Bp vaccine antigen…
MLST profiles:
Clonal complex (MLST):
Other toxins profiles:
Phase profiles:
Ribosomal MLST pro…
T3SS profiles:
Include old record versions

Add filter: Add

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Sequence bin
Assembly checks
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

Isolate count

0 [month]

Genome count

0 [month]

20 records returned. Click the hyperlinks for detailed information.

Isolate fields															Bp_vaccine antigens						cgMLST_pertussis	macrolide resistance					MLST									Other toxins	T3SS						Loci
id	isolate	aliases	duplicate number	species	site	disease	country	region	city	source type	host	other source info	source lab	sequencing technology	ptxB (BP3784)	ptxC (BP3787)	ptxD (BP3785)	ptxE (BP3786)	fhaB-2400_5550	BPagST	cgST	23S_rRNA	fhaB-2400_5550	fhaBx-1_3193	fhaBy-3190_7183	fhaBz-7180_10773	adk	fumC	glyA	tyrB	icd	pepA	pgm	ST	clonal complex	dnt (BP3439)	bopB (BP2252)	bopD (BP2253)	bopN (BP2257)	bsp22 (BP2256)	bteA (BP0500)	T3SStype	nrdA_765
266	AU9795	ASM226143v1; GCF_002261435.1; SAMN06767132		Genomic species 1	sputum	cystic fibrosis	USA			Human	human																																179
268	AU17610	ASM226133v1; GCF_002261335.1		Genomic species 1	sputum	cystic fibrosis	USA			Human	human																																183
271	AU8256	ASM226134v1; GCF_002261345.1; SAMN06767130		Genomic species 2	throat	cystic fibrosis	USA			Human	human																																196
286	AU9919	ASM226118v1; GCF_002261185.1; SAMN06767133		Genomic species 4	sputum		USA			Human	human																																202
287	AU14378	ASM226129v1; GCF_002261295.1; SAMN06767136		Genomic species 4	sputum	cystic fibrosis	USA			Human	human																																203
289	AU10456	ASM226131v1; GCF_002261315.1; SAMN06767134		Genomic species 5	throat	cystic fibrosis	USA			Human	human																																184
290	AU14646	ASM226147v1; GCF_002261475.1; SAMN06767137		Genomic species 5	sputum	cystic fibrosis	USA			Human	human																																185
291	AU3139	ASM226136v1; GCF_002261365.1; SAMN06767127		B. bronchiseptica II	sputum	cystic fibrosis	USA			Human	human				24	18	24										5	3	13	6	10	3	10	67		0				6	45		175
297	AU22978	ASM211970v1; GCF_002119705.1; SAMN06767144		B. bronchiseptica II	sputum	cystic fibrosis	USA			Human	human				19		19										10	7		6	10	11				0		5		4			178
299	AU18089	ASM226126v1; GCF_002261265.1; SAMN06767141		Genomic species 7	sputum	cystic fibrosis	USA			Human	human																																200
301	AU23756	ASM226141v1; GCF_002261415.1; SAMN06767145		Genomic species 7	sputum	cystic fibrosis	USA			Human	human																																201
302	AU19157	ASM211968v1; GCF_002119685.1; SAMN06767142		Genomic species 8	sputum	cystic fibrosis	USA			Human	human																																210
303	AU21707	ASM226142v1; GCF_002261425.1; SAMN06767143		Genomic species 18	lung	cystic fibrosis	USA			Human	human																																211
304	AU14267	ASM211974v1; GCF_002119745.1; SAMN06767135		Genomic species 9	sputum	cystic fibrosis	USA			Human	human																																214
305	AU17164	ASM211972v1; GCF_002119725.1; SAMN06767139		Genomic species 9	unknown		USA			Human	human																																215
306	AU16122	ASM226122v1; GCF_002261225.1; SAMN06767138		Genomic species 10	sputum	cystic fibrosis	USA			Human	human																																206
308	AU8856	ASM226121v1; GCF_002261215.1; SAMN06767131		Genomic species 11	sputum	cystic fibrosis	USA			Human	human																																213
309	AU6712	ASM226135v1; GCF_002261355.1; SAMN06767128		Genomic species 12	sputum	cystic fibrosis	USA			Human	human																																191
310	AU7206	ASM211966v1; GCF_002119665.1; SAMN06767129		Genomic species 13	sputum	cystic fibrosis	USA			Human	human																																205
1083	J49	ASM51884v1; GCA_000518845.1; JAEJ01; PRJNA202366; SAMN02584960		Genomic species 7			Unknown			Environment	environment	Aquatic; Soil	DOE Joint Genome Institute						0				0	0	0	0																	201

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

Dashboard settings

Layout

Links

Open links in new tab

Element controls

Enable options
Enable removal

Visual elements

Palette:
Note changing palette will reset user-selected colours.
Field: Add element

Versions

linked to any publication
not linked to any publication
Badhai et al. 2021 FEMS Microbiol Lett [Epub ahead of print]:
Bridel et al. 2022 Nat Commun 13:3807
Collings et al. 1985 J Med Microbiol 19:247-55
Gross et al. 2008 BMC Genomics 9:449
Horiguchi et al. 1993 Infect Immun 61:3611-5
Ivanov et al. 2015 BMC Genomics 16:863
Ivanov et al. 2016 Int J Syst Evol Microbiol 66:5452-5459
Ko et al. 2005 J Clin Microbiol 43:2516-9
Kozarewa et al. 2009 Nat Methods 6:291-5
Loong et al. 2017 Genom Data 12:69-70
Magyar et al. 1988 Vet Microbiol 18:135-46
Okada et al. 2014 Genome Announc 2:
Park et al. 2012 BMC Genomics 13:545
Parkhill et al. 2003 Nat Genet 35:32-40
Pubmed id#33034224
Pubmed id#33034225
Pubmed id#33034226
Pubmed id#33034227
Pubmed id#33034228
Pubmed id#33034229
Pubmed id#33034230
Pubmed id#33034231
Pubmed id#33034232
Pubmed id#33034233
Pubmed id#33034234
Pubmed id#33034235
Pubmed id#33034236
Pubmed id#33034237
Pubmed id#33034238
Pubmed id#33034239
Pubmed id#33034240
Pubmed id#33034241
Pubmed id#33034242
Pubmed id#33034243
Pubmed id#33034244
Pubmed id#33034245
Pubmed id#33034246
Pubmed id#33034247
Pubmed id#33034248
Pubmed id#33034249
Pubmed id#33034250
Pubmed id#33034251
Pubmed id#33034252
Pubmed id#33034253
Pubmed id#33034254
Pubmed id#33034255
Pubmed id#33034256
Pubmed id#33034257
Pubmed id#33034258
Pubmed id#33034259
Pubmed id#33034260
Pubmed id#33034261
Pubmed id#33034262
Pubmed id#33034263
Pubmed id#33034264
Pubmed id#33034265
Pubmed id#33034266
Pubmed id#33034267
Pubmed id#33034268
Pubmed id#33034269
Pubmed id#33034270
Pubmed id#33034271
Pubmed id#33034272
Pubmed id#33034273
Quail et al. 2011 Nat Methods 9:10-1
Rath et al. 2008 Clin Infect Dis 46:905-8
Register et al. 2015 Genome Announc 3:
Ross et al. 1967 Can J Comp Med Vet Sci 31:53-7
Sebaihia et al. 2006 J Bacteriol 188:6002-15
Sichtig et al. 2019 Nat Commun 10:3313
Spilker et al. 2016 Genome Announc 4:
Tazato et al. 2015 Int J Syst Evol Microbiol 65:4830-4838
Tettelin et al. 2017 Genome Announc 5:
Theofiles et al. 2014 Mayo Clin Proc 89:1378-88
Tran et al. 2022 Nat Commun 13:693
van Gent et al. 2012 PLoS One 7:e46407
Vandamme et al. 1995 Int J Syst Bacteriol 45:37-45
Vandamme et al. 1996 Int J Syst Bacteriol 46:849-58
Vandamme et al. 2015 Int J Syst Evol Microbiol 65:3674-3682
Wang et al. 2020 Infect Genet Evol 81:104258
Weigand et al. 2015 Genome Announc 3:
Weigand et al. 2016 Genome Announc 4:
Weigand et al. 2019 mSystems 4:
Wu et al. 2022 Front Microbiol 13:901617
Xu et al. 2019 Emerg Microbes Infect 8:461-470
Zhang et al. 2011 J Bacteriol 193:4017-8