Main projects defined in the Bordetella cgMLST database
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Project id
Short description
Full description
Isolates
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5
bebp_public
All public isolates from BEBP lab (Pasteur). Old public_isolates
171
9
Bouchez_2018_EID
All isolates published in Bouchez et al. Emerg Inf Dis. 2018
168
21
Bordetella genogroups genomes
20
23
Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
92
24
B. bronchiseptica phylogeny
Records for the phylogeny
211
25
B. pertussis phylogeny
(resistance macrolide = 23S RNA 13)
124
27
Public Genomes
public genomes analyzed in Bridel et al 2022
2085
29
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus
180
55
RodriguesBouchez_Eurosurveillance_2024
67 Bp isolates - end2023-april2024 - dataset Eurosurveillance (Rodrigues, Bouchez et al; PMID :39092529)
67
81
Bouchez-CMI2025-PMID40602497
367 Bp isolates collected in 2024 CNR-FR only from FR7215 to FR8644, including the 14 MRBP isolates
345
82
Bordetella_Nanopore_R10_2025
Benchmarking Nanopore R10 sequencing vs Illumina for cgMLST typing
8
87
Bouchez-JMM2022-Bparapertussis
Bordetella parapertussis Isolates from the publication in JMM https://doi.org/10.1099/jmm.0.001843