Main projects defined in the Bordetella cgMLST database
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Project id
Short description
Full description
Isolates
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5
bebp_public
All public isolates from BEBP lab (Pasteur). Old public_isolates
171
9
Bouchez_2018_EID
All isolates published in Bouchez et al. Emerg Inf Dis. 2018
168
21
Bordetella genogroups genomes
20
23
Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
92
24
B. bronchiseptica phylogeny
Records for the phylogeny
211
25
B. pertussis phylogeny
(resistance macrolide = 23S RNA 13)
124
27
Public Genomes
public genomes analyzed in Bridel et al 2022
2085
29
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus
180
50
To_remove_ONTR10-Illumina 2024 Bordetella genomes
Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing - Bordetella (2024)
104
55
RodriguesBouchez_Eurosurveillance_2024
67 Bp isolates - end2023-april2024 - dataset Eurosurveillance (Rodrigues, Bouchez et al; PMID :39092529)
67
82
Bordetella_Nanopore_R10_2025
Benchmarking Nanopore R10 sequencing vs Illumina for cgMLST typing
8
87
Bouchez-JMM2022-Bparapertussis
Bordetella parapertussis Isolates from the publication in JMM https://doi.org/10.1099/jmm.0.001843