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Full information on isolate ERR212374 (id:961)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
961
isolate
ERR212374
species
B. pertussis
country
Unknown
accession number
ERR212374
sender
Keith Jolley, University of Oxford, UK [England]
curator
Valerie Bouchez, Institut Pasteur, Paris, France (E-mail: valerie.bouchez@pasteur.fr)
update history
19 updates show details
date entered
2016-09-01
datestamp
2023-06-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Unknown
contigs
486
total length
3,926,828 bp
max length
73,448 bp
mean length
8,080 bp
N50
17,813
L50
73
N90
6,038
L90
220
N95
3,401
L95
264
%GC
67.28
Ns
0
gaps
0
loci tagged
3,387

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50N50 too low (warn threshold: 20,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella pertussis Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella pertussis 100%

Analysis performed: 2024-06-04

Schemes and loci

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