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Full information on isolate ERR212373 (id:960)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
960
isolate
ERR212373
species
B. pertussis
country
Unknown
accession number
ERR212373
sender
Keith Jolley, University of Oxford, UK [England]
curator
Valerie Bouchez, Institut Pasteur, Paris, France (E-mail: valerie.bouchez@pasteur.fr)
update history
18 updates show details
date entered
2016-09-01
datestamp
2023-06-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Unknown
contigs
360
total length
3,852,382 bp
max length
73,460 bp
mean length
10,702 bp
N50
17,778
L50
71
N90
6,349
L90
218
N95
3,940
L95
254
%GC
67.85
Ns
0
gaps
0
loci tagged
3,382

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50N50 too low (warn threshold: 20,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella pertussis Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella pertussis 100%

Analysis performed: 2024-06-04

Schemes and loci

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Tools

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