Home About Us Contact What's New
Home>Organism>Bordetella cgMLST>Isolate information
Help

Full information on isolate SAMEA168248 (id:951)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
951
isolate
SAMEA168248
alias
ERR225614
species
B. bronchiseptica I-1
country
Unknown
accession number
ERR225614
sender
Keith Jolley, University of Oxford, UK [England]
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
20 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Unknown
contigs
144
total length
5,188,908 bp
max length
176,689 bp
mean length
36,035 bp
N50
91,858
L50
21
N90
29,690
L90
59
N95
20,653
L95
69
%GC
68.23
Ns
0
gaps
0
loci tagged
3,349

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 100%

Analysis performed: 2024-06-04

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: