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Full information on isolate CARE970018BB (id:945)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
945
isolate
CARE970018BB
aliases
SAMN02263910; SRR942675
species
B. bronchiseptica I-1
country
USA
continent
North America
region
North America
host
pig
accession number
SRR942675
sender
Keith Jolley, University of Oxford, UK [England]
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
21 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
372
total length
5,233,058 bp
max length
140,858 bp
mean length
14,068 bp
N50
37,656
L50
43
N90
7,901
L90
158
N95
4,687
L95
200
%GC
68.17
Ns
0
gaps
0
loci tagged
3,297

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 100%

Analysis performed: 2024-06-04

Schemes and loci

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