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Full information on isolate MBORD665 (id:911)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
911
isolate
MBORD665
aliases
SAMN02231439; SRR931880
duplicate number
20
species
B. bronchiseptica I-1
country
Unknown
host
guinea pig
accession number
SRR931880
sender
Keith Jolley, University of Oxford, UK [England]
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
21 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
120
total length
5,154,866 bp
max length
344,483 bp
mean length
42,958 bp
N50
117,000
L50
14
N90
35,546
L90
41
N95
20,231
L95
51
%GC
68.26
Ns
0
gaps
0
loci tagged
3,341

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 100%

Analysis performed: 2024-06-04

Schemes and loci

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