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Full information on isolate MBORD678 (id:909)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
909
isolate
MBORD678
aliases
SAMN02231436; SRR931876
duplicate number
19
species
B. bronchiseptica I-1
country
Unknown
host
guinea pig
accession number
SRR931876
sender
Keith Jolley, University of Oxford, UK [England]
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
18 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
128
total length
5,198,393 bp
max length
375,846 bp
mean length
40,613 bp
N50
99,907
L50
16
N90
28,554
L90
48
N95
21,137
L95
58
%GC
68.23
Ns
0
gaps
0
loci tagged
3,366

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 100%

Analysis performed: 2024-06-04

Schemes and loci

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