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Full information on isolate MBORD762 (id:905)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
905
isolate
MBORD762
aliases
SAMN02231431; SRR931871
species
B. bronchiseptica I-1
country
Ireland
continent
Europe
region
Europe
host
guinea pig
accession number
SRR931871
sender
Keith Jolley, University of Oxford, UK [England]
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
17 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
102
total length
5,293,791 bp
max length
282,117 bp
mean length
51,900 bp
N50
136,056
L50
13
N90
51,853
L90
37
N95
32,385
L95
43
%GC
68.15
Ns
0
gaps
0
loci tagged
3,376

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 100%

Analysis performed: 2024-06-04

Schemes and loci

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