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Full information on isolate MO221 (id:900)

Projects

This isolate is a member of the following projects:

B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022

Provenance/primary metadata

id
900
isolate
MO221
aliases
SAMN02231425; SRR931865
duplicate number
15
species
B. bronchiseptica I-4
country
USA
continent
North America
region
North America
host
human
accession number
SRR931865
sender
Keith Jolley, University of Oxford, UK [England]
curator
Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
update history
23 updates show details
date entered
2016-09-01
datestamp
2022-03-31

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
104
total length
5,244,056 bp
max length
337,441 bp
mean length
50,424 bp
N50
123,563
L50
15
N90
38,980
L90
44
N95
26,488
L95
52
%GC
68.24
Ns
0
gaps
0
loci tagged
3,310

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 98%

Analysis performed: 2024-06-04

Schemes and loci

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