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Full information on isolate B0887 (id:859)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
B. bronchiseptica phylogeny
Records for the phylogeny
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
859
isolate
B0887
alias
ERR031101
species
B. pertussis
country
Unknown
accession number
ERR031101
sender
Keith Jolley, University of Oxford, UK [England]
curator
Valerie Bouchez, Institut Pasteur, Paris, France (E-mail: valerie.bouchez@pasteur.fr)
update history
22 updates show details
date entered
2016-09-01
datestamp
2023-06-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
801
total length
3,816,436 bp
max length
48,479 bp
mean length
4,765 bp
N50
8,660
L50
121
N90
2,400
L90
436
N95
1,543
L95
534
%GC
67.82
Ns
0
gaps
0
loci tagged
3,174

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigstoo many contigs (warn threshold: 500)
Assembly size
Minimum N50N50 too low (fail threshold: 10,000)
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella pertussis Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella pertussis 100%

Analysis performed: 2024-06-04

Schemes and loci

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