Full information on isolate E020 (id:604)
Projects
Provenance/primary metadata
- id
- 604
- isolate
- E020
- aliases
- ERR380642; WTCHG_45803_288
- species
- B. bronchiseptica II
- country
- USA
- continent
- North America
- region
- MO
- year
- 1974
- source type
- Human
- host
- human
- accession number
- ERR380642
- comments
- from CDC Pertussis lab, isolate name is CDC name, collected via NP swab or NP aspirate
- sender
- Keith Jolley, University of Oxford
- curator
- Sebastien Bridel, Institut Pasteur, Paris, France (E-mail: sbridel@pasteur.fr)
- update history
- 25 updates show details
- date entered
- 2016-09-01
- datestamp
- 2022-04-04
Publication (1)
- Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807
Sequence bin
- contigs
- 1,947
- total length
- 5,098,659 bp
- max length
- 69,952 bp
- mean length
- 2,619 bp
- N50
- 4,635
- L50
- 307
- N90
- 1,157
- L90
- 1,135
- N95
- 741
- L95
- 1,409
- %GC
- 67.90
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,513
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | too many contigs (fail threshold: 1,000) | |
Assembly size | ||
Minimum N50 | N50 too low (fail threshold: 10,000) | |
%GC |
Schemes and loci
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