Full information on isolate Bp20-Shangai-2017 (id:5271)
Provenance/primary metadata
- id
- 5271
- isolate
- Bp20-Shangai-2017
- species
- B. pertussis
- site
- nasopharynx
- disease
- pertussis
- country
- China
- continent
- Asia
- region
- MSBP
- city
- Shangai
- year
- 2017
- source type
- Human
- host
- human
- accession number
- SAMN33268552
- sender
- Valerie Bouchez
- curator
- Valerie Bouchez, Institut Pasteur, Paris, France (E-mail: valerie.bouchez@pasteur.fr)
- update history
- 6 updates show details
- date entered
- 2024-04-29
- datestamp
- 2025-10-06
Sequence bin
- method
- Illumina + PacBio hybrid
- contigs
- 1
- length
- 4,109,051 bp
- %GC
- 67.71
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,310
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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