Full information on isolate FR7009 (id:3850)
Projects
This isolate is a member of the following project:
- Bouchez-JMM2022-Bparapertussis
- Bordetella parapertussis Isolates from the publication in JMM https://doi.org/10.1099/jmm.0.001843
Provenance/primary metadata
- id
- 3850
- isolate
- FR7009
- species
- B. parapertussis
- country
- France
- continent
- Europe
- year
- 2022
- source type
- Human
- source lab
- CNR
- sender
- Valerie Bouchez, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2023-11-02
- datestamp
- 2025-03-26
Versions
More than one version of this isolate record exist.
- Older versions
- 2839
Sequence bin
- method
- Illumina
- contigs
- 88
- total length
- 4,718,685 bp
- max length
- 451,939 bp
- mean length
- 53,622 bp
- N50
- 88,791
- L50
- 15
- N90
- 30,681
- L90
- 47
- N95
- 20,262
- L95
- 57
- %GC
- 68.16
- Ns
- 965
- gaps
- 682
- loci tagged
- 2,905
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
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Tools
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Analysis: