Home About Us Contact What's New
Home>Organism>Bordetella cgMLST>Isolate information
Help

Full information on isolate AU22978 (id:297)

Projects

This isolate is a member of the following projects:

Bordetella genus phylogeny
Reference genomes for Bordetella genomic analysis. Public project
Public Genomes
public genomes analyzed in Bridel et al 2022
Public-nrdA project
public isolates used to build a phylogeny based on nrdA (BORD004376) locus

Provenance/primary metadata

id
297
isolate
AU22978
aliases
ASM211970v1; GCF_002119705.1; SAMN06767144
species
B. bronchiseptica II
site
sputum
disease
cystic fibrosis
country
USA
continent
North America
year
2011
source type
Human
host
human
comments
Bordetella genogroup 6 complete genome
sender
Theodore Spilker, Univ. of Michigan
curator
Auto Tagger
update history
12 updates show details
date entered
2013-10-29
datestamp
2023-10-19

Publication (1)

  • Bridel S, Bouchez V, Brancotte B, Hauck S, Armatys N, Landier A, Mühle E, Guillot S, Toubiana J, Maiden MCJ, Jolley KA, Brisse S (2022). A comprehensive resource for Bordetella genomic epidemiology and biodiversity studies. Nat Commun 13:3807

Sequence bin

method
Illumina
contigs
1
length
5,163,295 bp
%GC
68.45
Ns
0
gaps
0
loci tagged
2,515

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Bordetella bronchiseptica Pseudomonadota > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Bordetella > Bordetella bronchiseptica 100%

Analysis performed: 2024-06-04

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: