⛔ Maintenance: A BIGSdb-Pasteur maintenance is scheduled on Monday, April 07th. All services will be offline until late in the evening (Central European Time). During this period, the server and API will be unavailable. Please note that the job submission will be stopped and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us
Data access policy note: since January 1st, 2025, registration and authentication are mandatory to access all data curated after this date, either via the web interface or via the application programming interface (API authentication help link). Please contact us if you have any questions.
ReporTree added to BIGSdb-Pasteur
ReporTree is a pan-pathogen tool for automated and reproducible identification and characterization of genetic clusters developed by Mixão et al. (Genome Med, 2023)
This plugin creates the required input files for ReporTree and runs the tool to identify and characterize genetic clusters. A full description of the ReporTree plugin can be found in the BIGSdb manual.