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The BIGSdb website is implementing new settings regarding data access. Data curated in 2025 (and later) will not be accessible for anonymous (non-logged-in users). If you wish to have access to data curated in 2025 and beyond, please register on the platform and login when using it. Note that access via the application programming interface (API) will also require authentication to access recent data (API authentication help link).

To ensure a smooth transition, anonymous data access will be periodically closed and opened from 1st October 2024 until the end of the year. For detailed planning, please follow this link.

On 1st January 2025, registration will be permanently mandatory to access data curated after the 31st of December 2024.

Please contact us if you have any questions.

Members

BIGSdb-Pasteur is developed, maintained and expanded thanks to an interdisciplinary team of software developers (platform functionalities), informaticians (computing resources, storage), bioinformaticians (genotyping schemes, analytical methods) and expert curators (data integration and nomenclature service). Data are contributed by an impressive community of microbiologist end-users (National Reference Labs, public health agencies, researchers)

Coordination: Sylvain Brisse and Federica Palma

Curators

  • Sylvain Brisse, Institut Pasteur, Paris, France
  • Alexandra Moura, Institut Pasteur, Paris, France
  • Virginie Passet, Institut Pasteur, Paris, France
  • Federica Palma, Institut Pasteur, Paris, France
  • Carla Rodrigues, Institut Pasteur, Paris, France
  • Melanie Hennart, Institut Pasteur, Paris, France
  • Cyril Savin, Institut Pasteur, Paris, France
  • Mathieu Picardeau, Institut Pasteur, Paris, France
  • Céline Lorioux, Institut Pasteur, Paris, France
  • Sébastien Bridel, Institut Pasteur, Paris, France
  • Valérie Bouchez, Institut Pasteur, Paris, France
  • Beate Heym, Hospital Group Diaconesses Croix Saint-Simon, Paris, France
  • Philippe Bidet, INSERM; Paris Diderot University, Sorbonne Paris Cité, Paris, France
  • Edgar Badell-Ocando, Institut Pasteur, Paris, France
  • Radek Izdebski, National Medicines Institute, Warsaw, Poland
  • Kathryn Holt, London School of Hygiene and Tropical Medicine, UK
  • Marit AK Hetland, Stavanger University Hospital, Norway
  • Margaret Lam, University of Melbourne, Australia
  • Olivier Clermont, Inserm and Bichat Medical Faculty, Paris, France

Bioinformaticians

  • Julien Guglielmini, Institut Pasteur, Paris, France
  • Alexis Criscuolo, Institut Pasteur, Paris, France

IT Engineers

  • Youssef Ghorbal, Institut Pasteur, Paris, France
  • Brice Raffestin, Institut Pasteur, Paris, France
  • Hérvé Ménager, Institut Pasteur, Paris, France
  • Bryan Brancotte, Institut Pasteur, Paris, France

Software developers

  • Keith Jolley, University of Oxford, UK
  • Martin Maiden, University of Oxford, UK

Former collaborators (non-exhaustive list)

  • Jean-François Mariet, Institut Pasteur, Paris, France
  • Mylène Maury
  • Suzanne Bialek-Davenet, Paris Diderot University, France
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