ISO 9001: We are pleased to announce that the BIGSdb-Pasteur platform has obtained ISO9001 certification in March 2026, and has been included in the scope of the CRBIP ISO 9001:2015 certification.
Whole genome sequencing data requirements
Submitted genomes or assemblies must meet both sets of quality requirements:
- those related to the sequencing technology. Assemblies must be generated using an accepted technology and comply with its associated quality standards, see Technologies accepted.
- those specific to the bacterial group
Please refer to the assembly metrics below:
| Species | Size of genome | Number of contigs | C+G% | Coverage |
|---|---|---|---|---|
| K.pneumoniae | 4 700 000 - 6 300 000 | ≤ 500 | 56.1 - 58.1 | >= 40 |
| K. quasipneumoniae | 4 900 000 - 6 100 000 | ≤ 500 | 56.7 - 58.4 | >= 40 |
| K. quasivariicola | 5 400 000 - 6 100 000 | ≤ 500 | 56.1 - 57.4 | >= 40 |
| K. variicola | 5 200 000 - 6 200 000 | ≤ 500 | 56.5 - 57.8 | >= 40 |