⚠ Maintenance: A BIGSdb-Pasteur maintenance is scheduled on Tuesday, May 12th (Central European Time). During this period, the server and API will be unavailable. Please note that job submission will not be available and all unfinished jobs will be killed. Sorry for any inconvenience. If any questions, contact us
Whole genome sequencing data requirements
Submitted genomes or assemblies must meet both sets of quality requirements:
- those related to the sequencing technology. Assemblies must be generated using an accepted technology and comply with its associated quality standards, see Technologies accepted.
- those specific to the bacterial group
Please refer to the assembly metrics below:
| Species | Size of genome | Number of contigs | C+G% | Coverage |
|---|---|---|---|---|
| C. diphtheriae | 2 300 000 - 2 600 000 | 20 - 90 | 53 - 54 | >= 40 |
| C. belfantii | 2 500 000 - 2 900 000 | 150 - 220 | 53 - 54 | >= 40 |
| C. rouxii | 2 200 000 - 2 500 000 | 20 - 55 | 53 - 54 | >= 40 |
| C. ulcerans & C. ramonii | 2 400 000 - 2 800 000 | 5 - 60 | 53 - 54 | >= 40 |
| C. pseudotuberculosis | 2 200 000 - 2 300 000 | 10 - 30 | 53 - 54 | >= 40 |