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Full information on isolate INF291 (id:6185)

Projects

This isolate is a member of the following projects:

Public isolates: This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017: Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id: 6185
isolate: INF291
sender: Kat Holt, Melbourne U
curator: Auto Tagger
update history: 8 updates show details
date entered: 2017-12-04
datestamp: 2024-03-26
taxonomic designation: K. quasipneumoniae subsp. quasipneumoniae
phylogroup from ST: Kp4 (7 loci)
isolation year: 2014
city: Melbourne
country: Australia
continent: Oceania
source type: Human
host: Human
source details: Other swab
infection: Other
accession number: ERR1008749

Sequence bin

contigs: 15
total length: 5,207,137 bp
max length: 1,775,365 bp
mean length: 347,143 bp
N50: 930,829
L50: 2
N90: 150,986
L90: 7
N95: 101,759
L95: 9
%GC: 57.94
Ns: 14
gaps: 12
loci tagged: 665

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
MLST	7	7	100
Ribosomal MLST	53	53	100
scgMLST629_S	629	611	97

Schemes and loci

All loci
- Classical schemes
- Capsule
  - cps cluster genes
  - wzi

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