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Full information on isolate INF089 (id:6184)

Projects

This isolate is a member of the following projects:

Public isolates: This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017: Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id: 6184
isolate: INF089
sender: Kat Holt, Melbourne U
curator: Auto Tagger
update history: 9 updates show details
date entered: 2017-12-04
datestamp: 2024-03-26
taxonomic designation: K. quasipneumoniae subsp. similipneumoniae
phylogroup from ST: Kp2 (7 loci)
isolation year: 2013
city: Melbourne
country: Australia
continent: Oceania
source type: Human
host: Human
source details: Urine
infection: UTI
accession number: ERR1008648

Sequence bin

contigs: 29
total length: 5,437,415 bp
max length: 1,358,734 bp
mean length: 187,498 bp
N50: 578,360
L50: 4
N90: 119,170
L90: 12
N95: 83,939
L95: 15
%GC: 57.92
Ns: 132
gaps: 121
loci tagged: 665

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
MLST	7	7	100
Ribosomal MLST	53	53	100
scgMLST629_S	629	610	96

Schemes and loci

All loci

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