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Full information on isolate INF330 (id:6181)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6181
isolate
INF330
sender
Kat Holt, Melbourne U
curator
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update history
8 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2014
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Sputum
infection
Pneumonia
accession number
ERR1008782

Sequence bin

contigs
31
total length
5,660,855 bp
max length
1,379,981 bp
mean length
182,609 bp
N50
716,210
L50
3
N90
111,981
L90
11
N95
100,033
L95
13
%GC
57.25
Ns
40
gaps
36
loci tagged
674

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Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962098

Schemes and loci

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