Full information on isolate INF349 (id:6177)
Projects
Provenance/primary metadata
- id
- 6177
- isolate
- INF349
- sender
- Kat Holt, Melbourne U
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2017-12-04
- datestamp
- 2024-03-26
- taxonomic designation
- K. variicola
- phylogroup from ST
- Kp3 (7 loci)
- isolation year
- 2014
- city
- Melbourne
- country
- Australia
- continent
- Oceania
- source type
- Human
- host
- Human
- source details
- Bronchoalveolar lavage
- infection
- Pneumonia
- accession number
- ERR1015282
Sequence bin
- contigs
- 31
- total length
- 5,689,814 bp
- max length
- 1,049,487 bp
- mean length
- 183,543 bp
- N50
- 344,386
- L50
- 5
- N90
- 147,202
- L90
- 14
- N95
- 106,681
- L95
- 17
- %GC
- 57.27
- Ns
- 76
- gaps
- 66
- loci tagged
- 676
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Annotation quality metrics
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
scgMLST629_S | 629 | 621 | 98 |
Schemes and loci
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