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Full information on isolate INF287 (id:6174)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6174
isolate
INF287
sender
Kat Holt, Melbourne U
curator
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update history
9 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2014
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Urine
infection
UTI
accession number
ERR1008745

Sequence bin

contigs
35
total length
5,602,436 bp
max length
1,314,447 bp
mean length
160,070 bp
N50
474,288
L50
4
N90
109,147
L90
12
N95
88,967
L95
15
%GC
57.43
Ns
64
gaps
54
loci tagged
676

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962298

Schemes and loci

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