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Full information on isolate INF216 (id:6171)

Projects

This isolate is a member of the following projects:

Public isolates: This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017: Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id: 6171
isolate: INF216
sender: Kat Holt, Melbourne U
curator: Auto Tagger
update history: 9 updates show details
date entered: 2017-12-04
datestamp: 2024-03-26
taxonomic designation: K. variicola
phylogroup from ST: Kp3 (7 loci)
isolation year: 2013
city: Melbourne
country: Australia
continent: Oceania
source type: Human
host: Human
source details: Urine
infection: UTI
accession number: ERR1023853

Sequence bin

contigs: 30
total length: 5,358,588 bp
max length: 1,625,503 bp
mean length: 178,620 bp
N50: 509,739
L50: 3
N90: 296,454
L90: 9
N95: 98,601
L95: 11
%GC: 57.58
Ns: 71
gaps: 51
loci tagged: 675

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
MLST	7	7	100
Ribosomal MLST	53	53	100
scgMLST629_S	629	620	98

Schemes and loci

All loci

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