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Full information on isolate INF052 (id:6159)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6159
isolate
INF052
sender
Kat Holt, Melbourne U
curator
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update history
8 updates show details
date entered
2017-12-04
datestamp
2024-03-26
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Tissue
infection
Soft tissue
accession number
ERR1023785

Sequence bin

contigs
33
total length
5,297,879 bp
max length
780,441 bp
mean length
160,542 bp
N50
368,516
L50
6
N90
134,701
L90
14
N95
124,712
L95
16
%GC
57.51
Ns
122
gaps
102
loci tagged
681

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962799

Schemes and loci

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