Full information on isolate INF280 (id:6143)
Projects
Provenance/primary metadata
- id
- 6143
- isolate
- INF280
- sender
- Kat Holt, Melbourne U
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2017-12-04
- datestamp
- 2024-03-26
- taxonomic designation
- K. pneumoniae
- phylogroup from ST
- Kp1 (7 loci)
- isolation year
- 2014
- city
- Melbourne
- country
- Australia
- continent
- Oceania
- source type
- Human
- host
- Human
- source details
- Tissue
- infection
- Soft tissue
- accession number
- ERR1215615
Sequence bin
- contigs
- 36
- total length
- 5,120,899 bp
- max length
- 1,609,781 bp
- mean length
- 142,248 bp
- N50
- 355,699
- L50
- 4
- N90
- 94,499
- L90
- 14
- N95
- 72,843
- L95
- 17
- %GC
- 57.67
- Ns
- 54
- gaps
- 47
- loci tagged
- 681
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Annotation quality metrics
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
scgMLST629_S | 629 | 626 | 99 |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Third party:
Analysis: