Full information on isolate INF065 (id:6013)
Projects
Provenance/primary metadata
- id
- 6013
- isolate
- INF065
- sender
- Kat Holt, Melbourne U
- curator
- Auto Tagger
- update history
- 10 updates show details
- date entered
- 2017-10-23
- datestamp
- 2024-03-26
- taxonomic designation
- K. pneumoniae
- phylogroup from ST
- Kp1 (7 loci)
- isolation year
- 2013
- city
- Melbourne
- country
- Australia
- continent
- Oceania
- source type
- Human
- host
- Human
- source details
- Unknown
- accession number
- ERR1023796
Sequence bin
- contigs
- 69
- total length
- 5,498,118 bp
- max length
- 472,330 bp
- mean length
- 79,683 bp
- N50
- 254,835
- L50
- 8
- N90
- 68,947
- L90
- 25
- N95
- 34,936
- L95
- 30
- %GC
- 57.18
- Ns
- 112
- gaps
- 90
- loci tagged
- 694
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Annotation quality metrics
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
scgMLST629_S | 629 | 628 | 99 |
Schemes and loci
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