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Full information on isolate KSB2_1D (id:6009)

Projects

This isolate is a member of the following projects:

Public isolates: This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017: Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id: 6009
isolate: KSB2_1D
sender: Kat Holt, Melbourne U
curator: Auto Tagger
update history: 10 updates show details
date entered: 2017-10-23
datestamp: 2024-03-26
taxonomic designation: K. variicola
phylogroup from ST: Kp3 (7 loci)
isolation year: 2014
city: Melbourne
country: Australia
continent: Oceania
source type: Human
host: Human
source details: Unknown
accession number: ERR1023700

Sequence bin

contigs: 33
total length: 5,381,287 bp
max length: 1,599,665 bp
mean length: 163,070 bp
N50: 473,426
L50: 4
N90: 170,724
L90: 10
N95: 95,834
L95: 12
%GC: 57.63
Ns: 80
gaps: 68
loci tagged: 676

Show sequence bin

Assembly checks

Check	Status	Warn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
MLST	7	7	100
Ribosomal MLST	53	53	100
scgMLST629_S	629	621	98

Schemes and loci

All loci

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