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Full information on isolate KSB1_8E (id:6008)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6008
isolate
KSB1_8E
sender
Kat Holt, Melbourne U
curator
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update history
10 updates show details
date entered
2017-10-23
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Unknown
accession number
ERR1023632

Sequence bin

contigs
29
total length
5,403,975 bp
max length
1,041,808 bp
mean length
186,344 bp
N50
514,480
L50
4
N90
148,613
L90
11
N95
98,320
L95
14
%GC
57.65
Ns
80
gaps
66
loci tagged
676

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962198

Schemes and loci

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