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Full information on isolate INF114 (id:6003)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6003
isolate
INF114
sender
Kat Holt, Melbourne U
curator
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update history
10 updates show details
date entered
2017-10-23
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Unknown
accession number
ERR1008673

Sequence bin

contigs
36
total length
5,644,354 bp
max length
1,182,038 bp
mean length
156,788 bp
N50
379,662
L50
5
N90
102,617
L90
17
N95
98,612
L95
19
%GC
57.25
Ns
74
gaps
56
loci tagged
672

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62961798

Schemes and loci

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